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src/b/i/biskit-2.4/Biskit/TrajFlexMaster.py   biskit(Download)
    def cleanup( self ):
        """
        Tidy up.
        """
        T.tryRemove( self.outFolder, verbose=self.verbose, tree=1 )

src/b/i/biskit-2.4/Biskit/Dock/XRefineComplex.py   biskit(Download)
 
        try:
            t.tryRemove( self.path, tree=True )
            shutil.copytree( t.dataRoot() + '/xplor/inpRefine',
                             self.path )
        if not self.debug:
 
            t.tryRemove( self.rec_in )
            t.tryRemove( self.lig_in )
 
            t.tryRemove( self.rec_out )
            t.tryRemove( self.lig_out )

src/b/i/biskit-2.4/Biskit/Dock/Docker.py   biskit(Download)
    def cleanUp(self):
        t.tryRemove( self.out_folder, tree=1 )
 
    def dry_or_wet_run( self, run=True ):
        """ """

src/b/i/biskit-2.4/Biskit/WhatIf.py   biskit(Download)
 
        if not self.debug:
            T.tryRemove( self.f_pdb )
            T.tryRemove( self.f_relativeASA )
            T.tryRemove( self.f_residueASA )
 
            T.tryRemove('FOR???.DAT', wildcard=1)
            T.tryRemove('pdbout.tex')

src/b/i/biskit-2.4/Biskit/Executor.py   biskit(Download)
        """
        if not self.keep_out and not self.debug and self.f_out:
            t.tryRemove( self.f_out )
 
        if not self.keep_inp and not self.debug:
            t.tryRemove( self.f_in )
 
        if self.f_err and not self.debug:
            t.tryRemove( self.f_err )
                             self.tempdir )
            self.log.writeln( 'Removing temporary folder %s' % self.tempdir )
            t.tryRemove( self.tempdir, tree=True )
 
 
    def cleanUp(self):
        t.tryRemove(self.fout)
 
    def test_Executor( self ):
        """Executor test (run emacs ~/.biskit/settings.cfg)"""

src/b/i/biskit-2.4/Biskit/Mod/Benchmark.py   biskit(Download)
    def cleanUp(self):
        T.tryRemove( self.outfolder, tree=1 )
 
    def test_Benchmark(self):
        """Mod.Benchmark test"""

src/b/i/biskit-2.4/Biskit/Mod/Modeller.py   biskit(Download)
    def cleanup( self ):
        Executor.cleanup( self )
 
        if not self.disc_report:
            T.tryRemove( self.outfolder + self.F_RESULT_FOLDER, tree=1 )
    def cleanUp(self):
        T.tryRemove( self.outfolder, tree=1 )
 
class TestDry( TestBase ):
    """Incomplete test case without running Modeller"""

src/b/i/biskit-2.4/Biskit/Mod/TemplateCleaner.py   biskit(Download)
    def cleanUp(self):
        T.tryRemove( self.outfolder, tree=1 )
 
    def test_TemplateCleaner(self):
        """Mod.TemplateCleaner test"""

src/b/i/biskit-2.4/Biskit/Mod/Analyse.py   biskit(Download)
    def cleanUp(self):
        T.tryRemove( self.outfolder, tree=1 )
 
 
class ProjectAnalyzeTest( BT.BiskitTest ):

src/b/i/biskit-2.4/Biskit/Mod/SequenceSearcher.py   biskit(Download)
    def cleanUp(self):
        T.tryRemove( self.outfolder, tree=1 )
 
    def searchLocalBlast(self):
        self.searcher.localBlast( self.f_target, self.db, 'blastp',

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