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src/g/e/GenomicConsensus-HEAD/GenomicConsensus/quiver/utils.py   GenomicConsensus(Download)
from GenomicConsensus.utils import *
from GenomicConsensus.consensus import QuiverConsensus
import ConsensusCore as cc
 
def uniqueSingleBaseMutations(templateSequence, positions=None):

src/g/e/GenomicConsensus-HEAD/GenomicConsensus/quiver/quiver.py   GenomicConsensus(Download)
import logging
from pbcore.io import rangeQueries
import ConsensusCore as cc
 
from .. import reference

src/g/e/GenomicConsensus-HEAD/GenomicConsensus/quiver/model.py   GenomicConsensus(Download)
from GenomicConsensus.quiver.utils import asFloatFeature, fst, snd
from pbcore.chemistry import ChemistryLookupError
import ConsensusCore as cc
 
__all__ = [ "ParameterSet",

src/g/e/GenomicConsensus-HEAD/GenomicConsensus/quiver/diploid.py   GenomicConsensus(Download)
 
import numpy as np
import ConsensusCore as cc
 
# IUPAC reference:

src/g/e/GenomicConsensus-HEAD/GenomicConsensus/options.py   GenomicConsensus(Download)
def consensusCoreVersion():
    try:
        import ConsensusCore
        return ConsensusCore.Version.VersionString()
    except:

src/g/e/GenomicConsensus-HEAD/tests/unit/test_diploid.py   GenomicConsensus(Download)
 
from nose.tools import assert_equal as EQ
from GenomicConsensus.quiver.diploid import variantsFromAlignment
from GenomicConsensus.variants import Variant
import ConsensusCore as cc