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Returns a list of the mutation codes in the receiver in standard format

Parameters:
        pdb - An optional protool instance.
        If this is provided the mutations are returned in extended format.
        reduced - If True the codes are returned in reduced format.
        
Exceptions:
        Raises an AttributeError if pdb does not respond to resname() and is not None.
        Raises an MutationCodeApplicationError if the mutation code cannot be (more...)

src/p/e/PEATDB-2.3/PEATSA/Core/Matrix.py   PEATDB(Download)
		for row in self:
			mutationSet = Data.MutationSet(row[mutationsColumn])
			codes = mutationSet.mutationCodes(reduced=False)
 
			if matchMode == "All":
		for row in self:
			mutationSet = Data.MutationSet(row[mutationsColumn])
			codes = mutationSet.mutationCodes()
			subs = [Utilities.ParseMutationCode(code)[2] for code in codes]
 
				code = row[mutationColumn]
				set = Data.MutationSet(code=code)
				self.mutationHash['+'.join(set.mutationCodes())] = index
 
			except Exceptions.MutationCodeFormatError, data:
		try:
			set = Data.MutationSet(code=mutation)
			index = self.mutationHash["+".join(set.mutationCodes())]
		except KeyError:
			raise IndexError, 'No data for mutation %s' % mutation