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src/m/d/MDAnalysis-0.8.1/MDAnalysis/analysis/density.py   MDAnalysis(Download)
    else:
        # slower distance matrix based (calculate all with all distances first)
        import MDAnalysis.analysis.distances
        dist = numpy.zeros((len(solvent),len(protein)),dtype=numpy.float64)
        box = None  # as long as s_coor is not minimum-image remapped

src/m/d/MDAnalysisTests-0.8.1/MDAnalysisTests/test_analysis.py   MDAnalysisTests(Download)
from __future__ import print_function
import MDAnalysis
import MDAnalysis.analysis.distances
import MDAnalysis.analysis.align
import MDAnalysis.analysis.hbonds