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src/m/d/MDAnalysis-0.8.1/examples/rmsd_groups.py   MDAnalysis(Download)
 
 
R1 = MDAnalysis.analysis.rms.RMSD(u, ref1,
           select="backbone",             # superimpose on whole backbone of the whole protein
           groupselections=["backbone and (resid 1-29 or resid 60-121 or resid 160-214)",   # CORE
 
ref2 = MDAnalysis.Universe(PSF,CRD)    # reference open AdK (4AKE)
R2 = MDAnalysis.analysis.rms.RMSD(u, ref2,
           select="backbone",             # superimpose on whole backbone of the whole protein
           groupselections=["backbone and (resid 1-29 or resid 60-121 or resid 160-214)",   # CORE