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src/m/d/MDAnalysis-0.8.1/MDAnalysis/analysis/align.py   MDAnalysis(Download)
from MDAnalysis.core.log import ProgressMeter
#from MDAnalysis.core.util import asiterable # unused
from MDAnalysis.analysis.rms import rmsd, _process_selection
 
import os.path
        ref_atoms = reference.atoms
    else:
        select = _process_selection(select)
        mobile_atoms = mobile.selectAtoms(*select['mobile'])
        ref_atoms = reference.selectAtoms(*select['reference'])
    del _Writer
 
    select = _process_selection(select)
 
    ref_atoms = reference.selectAtoms(*select['reference'])