Did I find the right examples for you? yes no      Crawl my project      Python Jobs

All Samples(6)  |  Call(3)  |  Derive(0)  |  Import(3)

src/m/d/MDAnalysis-0.8.1/MDAnalysis/analysis/align.py   MDAnalysis(Download)
import MDAnalysis.core.qcprot as qcp
from MDAnalysis import SelectionError
from MDAnalysis.core.log import ProgressMeter
#from MDAnalysis.core.util import asiterable # unused
from MDAnalysis.analysis.rms import rmsd, _process_selection
    R = numpy.matrix(rot.reshape(3,3))
 
    percentage = ProgressMeter(nframes, interval=10, quiet=quiet,
                               format="Fitted frame %(step)5d/%(numsteps)d  [%(percentage)5.1f%%]\r")
 

src/m/d/MDAnalysis-0.8.1/MDAnalysis/analysis/rms.py   MDAnalysis(Download)
import MDAnalysis.core.qcprot as qcp
from MDAnalysis import SelectionError, NoDataError
from MDAnalysis.core.log import ProgressMeter
from MDAnalysis.core.util import asiterable
 
        rmsd = numpy.zeros((nframes, 3 + len(self.groupselections_atoms)))
 
        percentage = ProgressMeter(nframes, interval=10,
                                   format="RMSD %(rmsd)5.2f A at frame %(step)5d/%(numsteps)d  [%(percentage)5.1f%%]\r")
 

src/m/d/MDAnalysis-0.8.1/MDAnalysis/analysis/hbonds.py   MDAnalysis(Download)
import MDAnalysis.KDTree.NeighborSearch as NS
from MDAnalysis.core.util import norm, angle, parse_residue
from MDAnalysis.core.log import ProgressMeter
 
import warnings
            logger.exception()
            raise
        pm = ProgressMeter(len(frames),
                           format="HBonds frame %(step)5d/%(numsteps)d [%(percentage)5.1f%%]\r")