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src/m/g/mgtaxa-HEAD/MGT/Proj/CrisprApp.py   mgtaxa(Download)
from MGT.Taxa import *
from MGT.FastaIO import *
from MGT.BlastDb import BlastDb,runBlast
from MGT.App import *
 
        hsps = groupRecArray(hsps,"id_h")
        out = open(self.crArrBlastMatchFile,'w')
        blastDb = BlastDb(blastDataDir=self.opt.readsBlastDir)
        reader = blastDb.fastaReader(dbName=self.readsBlastDb,giFile=None,defLineTargetOnly=True,maxDegen=None)
        for rec in reader.records():

src/m/g/mgtaxa-HEAD/MGT/CollectTaxa.py   mgtaxa(Download)
from MGT.Taxa import *
from MGT.Sql import *
from MGT.BlastDb import BlastDb
from SeqDb import *
 
    def __init__(self,dbSql):
 
        MGTOptions.__init__(self)
        self.dbSql = dbSql
        self.blastDb = BlastDb()

src/m/g/mgtaxa-HEAD/MGT/SeqDb.py   mgtaxa(Download)
from MGT.Taxa import *
from MGT.Sql import *
from MGT.BlastDb import BlastDb
 
from MGT.Hdf import *
        outGi.close()
        blastAlias = self.blastSelAlias
        blastDb = BlastDb()
        blastDb.makeDbAlias(blastAlias,giFile)
        if self.debugFakeSequence: