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All Samples(3)  |  Call(3)  |  Derive(0)  |  Import(0)

src/m/g/mgtaxa-HEAD/MGT/Proj/HctApp.py   mgtaxa(Download)
            inFasta = pjoin(options.refSeqDataDir,"%s.genomic.fna.gz" % orgType)
        inp = FastaReader(inFasta)
        for rec in inp.records():
            line = rec.header()[1:]
            parts = line.strip().split('|',4)
        inFasta = self.store.getFilePath('%s.protein.cat.gz' % orgType)
        inp = FastaReader(inFasta)
        for rec in inp.records():
            hdr = CvTreeId.splitFastaDeflineCvTree(rec.header())
            idSeq = idGenSeq()

src/m/g/mgtaxa-HEAD/MGT/Proj/GbFeatApp.py   mgtaxa(Download)
            inpFasta = FastaReader(fastaFile)
            iRec = 0
            for rec in inpFasta.records():
                kmerCnt.process(rec.sequence(format="array"))
                iRec += 1