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header_parser.py


Parse the header of a variant file.

Create a variant objects and a dictionary with individuals that have a dictionary with genotypes for each variant.


Copyright (c) 2013 __MyCompanyName__. All rights reserved.

src/m/i/mip_family_analysis-0.9.3/scripts/run_mip_family_analysis.py   mip_family_analysis(Download)
from Mip_Family_Analysis.Variants import variant_parser
from Mip_Family_Analysis.Models import genetic_models, score_variants
from Mip_Family_Analysis.Utils import variant_consumer, variant_sorter, header_parser, variant_printer
 
def get_family(args):

src/m/i/mip_family_analysis-0.9.3/Mip_Family_Analysis/Variants/variant_parser.py   mip_family_analysis(Download)
def main():
    from multiprocessing import JoinableQueue
    from Mip_Family_Analysis.Utils import header_parser
    from Mip_Family_Analysis.Utils import annotation_parser
    parser = argparse.ArgumentParser(description="Parse different kind of pedigree files.")