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variant_parser.py


Parse a file with variant info, this can be a .vcf file, an annotated annovar file, 
a annotated .txt cmms file, a annotated .txt cmms_ranked .

Create a variant objects and a dictionary with individuals that have a dictionary with genotypes for each variant.


Copyright (c) 2013 __MyCompanyName__. All rights reserved.

src/m/i/mip_family_analysis-0.9.3/scripts/run_mip_family_analysis.py   mip_family_analysis(Download)
from ped_parser import parser
 
from Mip_Family_Analysis.Variants import variant_parser
from Mip_Family_Analysis.Models import genetic_models, score_variants
from Mip_Family_Analysis.Utils import variant_consumer, variant_sorter, header_parser, variant_printer