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src/p/y/Pymol-script-repo-HEAD/modules/ADT/MolKit/VisionInterface/MolKitNodes.py   Pymol-script-repo(Download)
import numpy.oldnumeric as Numeric, string, os
 
from NetworkEditor.items import NetworkNode
from Vision import UserLibBuild
 
class writePDBFiles(NetworkNode):
    """
    Write a PDF file for each set of coordinates in coordsList
 
    [filenames] <- writePDBFiles(mol, coordsList, filename)
class PDB_SYMTRY(NetworkNode):
    """inputs PDB file, parses SYMTRY records and returns a list of (4x4)
    matrices."""
 
    def __init__(self, name='PDB_SYMTRY', **kw):
class PDB_MTRIX(NetworkNode):
    """
    Get non crystallographic symmetry matrices
 
    inputs PDB file, parses MTRIX1,2,3 records and output a list of (4x4)
class CenterAndRadius(NetworkNode):
 
    def __init__(self, name='centerAndRad', **kw):
        kw['name'] = name
        apply( NetworkNode.__init__, (self,), kw)

src/p/y/Pymol-script-repo-HEAD/modules/ADT/AutoDockTools/VisionInterface/AdtNodes.py   Pymol-script-repo(Download)
 
from Vision import UserLibBuild
from NetworkEditor.items import NetworkNode
from MolKit.molecule import Atom, AtomSet, Molecule, MoleculeSet
from MolKit.protein import Residue, ResidueSet, Chain, ChainSet
class GridParameterFileBrowserNE(NetworkNode):
    """A specialized Tkinter Filebrowser. Double-clicking into the entry opens the
filebrowser."""
 
    def __init__(self, name='Grid Parameter File Browser', **kw):
class DockingParameterFileBrowserNE(NetworkNode):
    """A specialized Tkinter Filebrowser. Double-clicking into the entry opens the
filebrowser."""
 
    def __init__(self, name='Docking Parameter File Browser', **kw):
class ReadGridParameterFile(NetworkNode):
    #mRequiredTypes = {}
    #mRequiredSynonyms = [
    #]
    def __init__(self, constrkw = {},  name='ReadGridParameterFile', **kw):
class ReadDockingParameterFile(NetworkNode):
    #mRequiredTypes = {}
    #mRequiredSynonyms = [
    #]
    def __init__(self, constrkw = {},  name='ReadDockingParameterFile', **kw):

src/p/y/Pymol-script-repo-HEAD/modules/ADT/AutoDockTools/VisionInterface/Adt/Mapper/InputValidation.py   Pymol-script-repo(Download)
 
# import node's base class node
from NetworkEditor.items import NetworkNode
class InputValidation(NetworkNode):
    """

src/p/y/Pymol-script-repo-HEAD/modules/ADT/AutoDockTools/VisionInterface/Adt/Mapper/ADTFileNames.py   Pymol-script-repo(Download)
 
# import node's base class node
from NetworkEditor.items import NetworkNode
class ADTFileNames(NetworkNode):
    """

src/p/y/Pymol-script-repo-HEAD/modules/ADT/AutoDockTools/VisionInterface/Adt/Input/UrlLigandDB.py   Pymol-script-repo(Download)
#########################################################################
 
from NetworkEditor.items import NetworkNode
 
from AutoDockTools.VisionInterface.Adt.LigandDB import LigandDB
 
import sys
import os
 
class UrlLigandDB(NetworkNode):

src/p/y/Pymol-script-repo-HEAD/modules/ADT/AutoDockTools/VisionInterface/Adt/Input/StructureBrowser.py   Pymol-script-repo(Download)
#########################################################################
 
from NetworkEditor.items import NetworkNode
 
from AutoDockTools.VisionInterface.Adt.receptor import receptor
 
import os
 
class StructureBrowser(NetworkNode):

src/p/y/Pymol-script-repo-HEAD/modules/ADT/AutoDockTools/VisionInterface/Adt/Input/PublicServerLigandDB.py   Pymol-script-repo(Download)
#########################################################################
 
from NetworkEditor.items import NetworkNode
 
from AutoDockTools.VisionInterface.Adt.LigandDB import LigandDB
class PublicServerLigandDB(NetworkNode):
    """
    List of available public libraries on the virtual screening server.
    A description of the ligand libraries can be found on
    http://nbcr.sdsc.edu/pub/wiki/index.php?title=Virtual_Screening_Libraries

src/p/y/Pymol-script-repo-HEAD/modules/ADT/AutoDockTools/VisionInterface/Adt/Input/PreparedStructureBrowser.py   Pymol-script-repo(Download)
#########################################################################
 
from NetworkEditor.items import NetworkNode
 
from AutoDockTools.VisionInterface.Adt.receptor import receptor
 
import os
 
class PreparedStructureBrowser(NetworkNode):

src/p/y/Pymol-script-repo-HEAD/modules/ADT/AutoDockTools/VisionInterface/Adt/Input/MakeGpfDpfCopies.py   Pymol-script-repo(Download)
#########################################################################
 
from NetworkEditor.items import NetworkNode
from AutoDockTools.VisionInterface.Adt.dpf_template import dpf_template
from AutoDockTools.VisionInterface.Adt.gpf_template import gpf_template
 
class MakeGpfDpfCopies(NetworkNode):

src/p/y/Pymol-script-repo-HEAD/modules/ADT/AutoDockTools/VisionInterface/Adt/Input/MakeGPFCopies.py   Pymol-script-repo(Download)
#########################################################################
 
from NetworkEditor.items import NetworkNode
from AutoDockTools.VisionInterface.Adt.gpf_template import gpf_template
 
class MakeGPFCopies(NetworkNode):

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