Did I find the right examples for you? yes no

All Samples(3)  |  Call(3)  |  Derive(0)  |  Import(0)

src/o/r/Orange-Bioinformatics-2.5.25/docs/rst/reference/code/gsea_instances.py   Orange-Bioinformatics(Download)
 
matcher = gene.matcher([gene.GMKEGG("Homo sapiens")])
genesets = geneset.collections((("KEGG",), "Homo sapiens"))
 
#the number of permutations (n) should be much higher

src/o/r/Orange-Bioinformatics-2.5.25/docs/rst/reference/code/gsea_genes.py   Orange-Bioinformatics(Download)
 
matcher = gene.matcher([gene.GMKEGG("Homo sapiens")])
genesets = geneset.collections((("KEGG",), "Homo sapiens"))
 
#the number of permutations (n) should be much higher

src/o/r/Orange-Bioinformatics-2.5.25/docs/rst/reference/code/gsea2.py   Orange-Bioinformatics(Download)
 
matcher = gene.matcher([[gene.GMKEGG("dicty"), gene.GMDicty()]])
genesets =  geneset.collections((("KEGG",), "dicty"))
 
res = gsea.direct(data, matcher=matcher, min_part=0.05,