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src/o/r/Orange-Bioinformatics-2.5.25/docs/rst/reference/code/gsea_instances.py   Orange-Bioinformatics(Download)
import Orange
from Orange.bio import dicty, geneset, gsea, gene, geo
 
gds = geo.GDS("GDS10")
data = gds.getdata(transpose=True) 

src/o/r/Orange-Bioinformatics-2.5.25/docs/rst/reference/code/gsea_genes.py   Orange-Bioinformatics(Download)
import Orange
from Orange.bio import dicty, geneset, gsea, gene, geo
 
gds = geo.GDS("GDS10")
data = gds.getdata() 

src/o/r/Orange-Bioinformatics-2.5.25/docs/rst/reference/code/geo_gds6.py   Orange-Bioinformatics(Download)
import Orange.bio.geo
 
gds = Orange.bio.geo.GDS("GDS2960")
data = gds.getdata(sample_type="disease state", transpose=True)
print "Samples: %d, Genes: %d" % (len(data), len(data.domain.attributes))

src/o/r/Orange-Bioinformatics-2.5.25/docs/rst/reference/code/geo_gds3.py   Orange-Bioinformatics(Download)
import Orange
 
gds = Orange.bio.geo.GDS("GDS1676")
data = gds.getdata(sample_type="infection")
print "Genes: %d, Samples: %d" % (len(data), len(data.domain.attributes))

src/o/r/Orange-Bioinformatics-2.5.25/docs/rst/reference/code/geo_gds2.py   Orange-Bioinformatics(Download)
import Orange.bio.geo
 
gds = Orange.bio.geo.GDS("GDS1210")
 
data = gds.getdata(report_genes=True, transpose=False)