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src/b/i/biskit-2.4/Biskit/PDBParseNCBI.py   biskit(Download)
import Biskit.settings as settings
import Biskit as B
from PDBParser import PDBParser, PDBParserError
from PDBParseModel import PDBParseModel
 
                    return open(f)
 
        raise PDBParserError( "Couldn't find PDB file locally.")
 
 
            from Bio import File
        except:
            raise PDBParserError('Could not find Biopython - ' + \
                                 'remote fetching of PDBs is not supported.')
 
 
        if not uhandle.peekline():
            raise PDBParserError( "Couldn't retrieve ", rcsb_url )
 
        return uhandle
        if type( handle ) is str:
            if len(handle) < 5000:
                raise PDBParserError( "Couldn't extract PDB Info." )
            handle =  cStringIO.StringIO( handle )
 

src/b/i/biskit-2.4/Biskit/PDBParseModel.py   biskit(Download)
import Biskit.tools as T
import Biskit as B
from PDBParser import PDBParser, PDBParserError
 
 

src/b/i/biskit-2.4/Biskit/PDBParserFactory.py   biskit(Download)
from PDBParsePickle import PDBParsePickle
from PDBParseNCBI   import PDBParseNCBI
from PDBParser import PDBParserError
 
class PDBParserFactory:

src/b/i/biskit-2.4/Biskit/PDBParsePickle.py   biskit(Download)
import Biskit as B
 
from PDBParser import PDBParserError
from PDBParseModel import PDBParseModel