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src/b/i/bioEuler-HEAD/src/OLD/superimposer.py   bioEuler(Download)
    #prot1 single chain
    pdbReader = PDBReader(prot1, repo)
    protein1 = pdbReader.get_protein_from_PDB()
    p1cA = protein1.get_chain('A').orient()
    bb1 = protein1.get_backbone().orient()
    #prot2 single chain
    pdbReader = PDBReader(prot2, repo)
    protein2 = pdbReader.get_protein_from_PDB()
    p2cA = protein2.get_chain('A').orient()
    bb2 = protein2.get_backbone().orient()
    #prot3 single chain
    pdbReader = PDBReader(prot3, repo)
    protein3 = pdbReader.get_protein_from_PDB()
    p3cA = protein3.get_chain('A').orient()
    bb3 = protein3.get_backbone().orient()
    #prot4 single chain
    pdbReader = PDBReader(prot4, repo)
    protein4 = pdbReader.get_protein_from_PDB()
    p4cA = protein4.get_chain('A').orient()
    bb4 = protein4.get_backbone().orient()
    #prot5 - has multiple chains
    pdbReader = PDBReader(prot5, repo)
    protein5 = pdbReader.get_protein_from_PDB()
    p5cA = protein5.get_chain('A').orient()
    bb5 = protein5.get_splitted_backbone()[0].orient()

src/b/i/bioEuler-HEAD/src/OLD/OOBioEuler.py   bioEuler(Download)
        for line in FILE:
            pdbReader = PDBReader(line[:4], os.path.join("..","repo"))
            protein = pdbReader.get_protein_from_PDB()
            splitted_line = line.split(" ")
            name = str(splitted_line[0].strip('\n\t'))

src/b/i/bioEuler-HEAD/src/OLD/test01.py   bioEuler(Download)
    #prot1
    pdbReader = PDBReader(prot1, repo)
    protein1 = pdbReader.get_protein_from_PDB()
 
    #prot2
    pdbReader = PDBReader(prot2, repo)
    protein2 = pdbReader.get_protein_from_PDB()