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src/p/e/PEATDB-2.3/PEATDB/plugins/KineticsAnalysis.py PEATDB(Download)
ref = dup+'_'+'room'+'_'+ph
refact = E.getMetaData(ref)['a']
refacterr = E.getMeta(ref, 'exp_errors')['a'][1]
for temp in tempslst:
d = dup+'_'+str(temp)+'_'+ph
print 'negative slope'
act=0
acterr = E.getMeta(d, 'exp_errors')['a'][1]
percact = act / refact
yerror = percact * math.sqrt( pow(acterr/act,2) + pow(refacterr/refact,2))
phvals.append(float(ph.replace(',','.')))
tms.append(E.getMetaData(dsetname)['t50'])
tmerrs.append(E.getMeta(dsetname, 'exp_errors')['t50'][1])
#finally add temp vs ph plot and fit
try:
slope = E.getMetaData(d)['a']
yerror = E.getMeta(d, 'exp_errors')['a'][1]
except:
print 'no slope, skipping'
kcatkm = (kcat/km) / 1000
vmaxerror = E.getMeta(d, 'exp_errors')['Vmax'][1]
kmerror = E.getMeta(d, 'exp_errors')['Km'][1]
#kmpercerror = kmerror / (km / dil)