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Removes any duplicates in the current in memory list and optionally the underlying file

src/p/e/PEATDB-2.3/PEATDB/plugins/PEATSAplugin.py   PEATDB(Download)
        for s in sets:            
            self.mutationList.addMutant(s, autoUpdate=False, ignoreDuplicates=True)
        self.mutationList.removeDuplicates(autoUpdate=False)
        job.setMutationListFile(self.mutationList)
        job.setState('Ready')