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src/p/e/PEATDB-2.3/PEATDB/scripts/PEAT_SACalc.py   PEATDB(Download)
        print 'Got ref protein', self.refprot
        mutantCollection = Core.Data.MutantCollection(pdbFile='wt.pdb', name=name,
                                                    location=pdbdir, clean='no')
        print 'created mutant collection instance'
        #no dir given, we don't need the peat project if mutantcollection available
        P = PEATrunner()
        m = Core.Data.MutantCollection(name=opts.mut, location='/local/farrell')
        print m
    if opts.stab == False and opts.pka == False: