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src/b/c/bcbb-HEAD/align/Alignments.py   bcbb(Download)
import numpy
 
from Phast import PhastConsCommandline
 
class AlignConservationFinder:
            }
        estimate_params.update(self._base_params)
        estimate_cl = PhastConsCommandline(**estimate_params)
        p = subprocess.Popen(str(estimate_cl).split(), stderr=subprocess.PIPE)
        p.wait()
        calcluate_params.update(self._base_params)
 
        calcluate_cl = PhastConsCommandline(**calcluate_params)
        #print calcluate_cl
        error_out = StringIO.StringIO()