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src/c/g/cgat-HEAD/CGATPipelines/pipeline_docs/pipeline_medip/trackers/MedipReport.py   cgat(Download)
# This should be automatically gleaned from pipeline_chipseq.py
###################################################################
import Pipeline
PARAMS_PIPELINE = Pipeline.peekParameters(".",
                                          "pipeline_medip.py")

src/c/g/cgat-HEAD/CGATPipelines/pipeline_docs/metapipeline_medip/trackers/MetaMedipReport.py   cgat(Download)
# This should be automatically gleaned from pipeline_chipseq.py
###################################################################
import Pipeline
PARAMS_PIPELINE = Pipeline.peekParameters(".",
                                          "metapipeline_medip.py")

src/c/g/cgat-HEAD/CGATPipelines/pipeline_docs/pipeline_metagenomebenchmark/pipeline_metagenomebenchmark.py   cgat(Download)
 
# load options from the config file
import Pipeline as P
P.getParameters( 
    "pipeline.ini" )

src/c/g/cgat-HEAD/CGATPipelines/pipeline_docs/pipeline_metagenomeassembly/pipeline_metagenomeassembly.py   cgat(Download)
 
# load options from the config file
import Pipeline as P
P.getParameters( 
    "pipeline.ini" )

src/c/y/Cython-0.20.1/Cython/Compiler/Main.py   Cython(Download)
    def process_pxd(self, source_desc, scope, module_name):
        import Pipeline
        if isinstance(source_desc, FileSourceDescriptor) and source_desc._file_type == 'pyx':
            source = CompilationSource(source_desc, module_name, os.getcwd())
            result_sink = create_default_resultobj(source, self.options)
def run_pipeline(source, options, full_module_name=None, context=None):
    import Pipeline
 
    source_ext = os.path.splitext(source)[1]
    options.configure_language_defaults(source_ext[1:]) # py/pyx

src/c/y/cython-HEAD/Cython/Compiler/Main.py   cython(Download)
    def process_pxd(self, source_desc, scope, module_name):
        import Pipeline
        if isinstance(source_desc, FileSourceDescriptor) and source_desc._file_type == 'pyx':
            source = CompilationSource(source_desc, module_name, os.getcwd())
            result_sink = create_default_resultobj(source, self.options)
def run_pipeline(source, options, full_module_name=None, context=None):
    import Pipeline
 
    source_ext = os.path.splitext(source)[1]
    options.configure_language_defaults(source_ext[1:]) # py/pyx

src/c/y/CythonCTypesBackend-HEAD/Cython/Compiler/Main.py   CythonCTypesBackend(Download)
    def process_pxd(self, source_desc, scope, module_name):
        import Pipeline
        if isinstance(source_desc, FileSourceDescriptor) and source_desc._file_type == 'pyx':
            source = CompilationSource(source_desc, module_name, os.getcwd())
            result_sink = create_default_resultobj(source, self.options)
def run_pipeline(source, options, full_module_name = None):
    import Pipeline
 
    context = options.create_context()
 

src/c/y/Cython-0.20.1/Cython/Compiler/UtilityCode.py   Cython(Download)
        excludes = [AutoTestDictTransform]
 
        import Pipeline, ParseTreeTransforms
        context = CythonUtilityCodeContext(self.name)
        context.prefix = self.prefix

src/c/y/cython-HEAD/Cython/Compiler/UtilityCode.py   cython(Download)
        excludes = [AutoTestDictTransform]
 
        import Pipeline, ParseTreeTransforms
        context = CythonUtilityCodeContext(self.name)
        context.prefix = self.prefix

src/c/g/cgat-HEAD/scripts/runExpression.py   cgat(Download)
except ImportError:
    import Experiment as E
    import Pipeline as P
    import Expression
 

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