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src/c/g/cgat-HEAD/CGATPipelines/pipeline_chipseq.py   cgat(Download)
        minreads = int(fh.read())
        fh.close
        PipelineChipseq.buildSimpleNormalizedBAM(infiles,
                                                 outfile,
                                                 minreads)

src/c/g/cgat-HEAD/obsolete/pipeline_proj012_chipseq.py   cgat(Download)
    # If chip > input then sample chip reads
    if chip_reads > input_reads:
        PIntervals.buildSimpleNormalizedBAM( (infile,countfile1), outfile, input_reads)
        statement = '''cp %(controlfile)s %(controlfilenorm)s; cp %(controlfile)s.bai %(controlfilenorm)s.bai; '''
        P.run()
    else:
        PIntervals.buildSimpleNormalizedBAM( (controlfile,countfile2), controlfilenorm, chip_reads)

src/c/g/cgat-HEAD/CGATPipelines/pipeline_capseq.py   cgat(Download)
            P.run()
        else:
            PIntervals.buildSimpleNormalizedBAM((infile, countfile[infile]), "%s.norm.bam" % P.snip(
                infile, ".dedup.mapped.bam"), reads[smallest_bam])