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src/c/g/cgat-HEAD/obsolete/pipeline_proj012_chipseq.py   cgat(Download)
def mergeIntervals(infile, outfile):
    '''Merge intervals less than n bases apart in each dataset and update foldchange scores'''
    d = PARAMS["intervals_merge_dist"]
    method = PARAMS["intervals_foldchange_merge_method"]
    PIntervals.mergeIntervalsWithScores( infile, outfile, d, method )

src/c/g/cgat-HEAD/CGATPipelines/pipeline_capseq.py   cgat(Download)
def mergeIntervals(infile, outfile):
    '''Merge intervals less than n bases apart in each dataset and update foldchange scores'''
    d = PARAMS["intervals_merge_dist"]
    method = PARAMS["intervals_foldchange_merge_method"]
    PIntervals.mergeIntervalsWithScores(infile, outfile, d, method)