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Created on Sep 29, 2011

@author: ksahlin

This file is part of BESST.

BESST is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.(more...)

src/b/e/BESST-1.0.4.4/BESST/MakeScaffolds.py   BESST(Download)
import multiprocessing
 
import Contig, Scaffold, Parameter
import GenerateOutput as GO
from mathstats.normaldist.truncatedskewed import param_est as GC

src/b/e/BESST-1.0.4.4/BESST/ExtendLargeScaffolds.py   BESST(Download)
 
if __name__ == '__main__':
    import Scaffold
    small_scaffolds_test = {}
    for i in range(1, 7):

src/b/e/BESST-1.0.4.4/BESST/CreateGraph.py   BESST(Download)
 
import Contig
import Scaffold
from Parameter import counters
from mathstats.normaldist import normal

src/b/e/BESST-HEAD/BESST/MakeScaffolds.py   BESST(Download)
import multiprocessing
 
import Contig, Scaffold, Parameter
import GenerateOutput as GO
from mathstats.normaldist.truncatedskewed import param_est as GC

src/b/e/BESST-HEAD/BESST/ExtendLargeScaffolds.py   BESST(Download)
 
if __name__ == '__main__':
    import Scaffold
    small_scaffolds_test = {}
    for i in range(1, 7):

src/b/e/BESST-HEAD/BESST/CreateGraph.py   BESST(Download)
 
import Contig
import Scaffold
from Parameter import counters
from mathstats.normaldist import normal

src/b/e/BESST_RNA-HEAD/src/MakeScaffolds.py   BESST_RNA(Download)
@author: ksahlin
'''
import Contig, Scaffold, Parameter
import GenerateOutput as GO
import networkx as nx

src/b/e/BESST_RNA-HEAD/src/CreateGraph.py   BESST_RNA(Download)
 
import pysam
import Contig, Scaffold, Parameter
import GenerateOutput as GO
import networkx as nx

src/b/e/BESST-HEAD/test_implementations/testscripts/MakeScaffolds-safecopy.py   BESST(Download)
@author: ksahlin
'''
import Contig,Scaffold,Parameter
 
import GenerateOutput as GO

src/b/e/BESST-HEAD/test_implementations/testscripts/ExtendLargeScaffolds-old.py   BESST(Download)
 
if __name__ == '__main__':
    import Scaffold 
    small_scaffolds_test ={} 
    for i in range(1,7):