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src/b/i/bioscons-HEAD/examples/RAxML_subalign/remove_one.py   bioscons(Download)
import re
 
import Seq
 
def write_interleaved(fout, seqs):

src/s/e/Seq-HEAD/scripts/sto2other.py   Seq(Download)
#!/usr/bin/env python
 
import sys
import Seq
from optparse import OptionParser

src/s/e/Seq-HEAD/scripts/sto2fasta.py   Seq(Download)
#!/usr/bin/env python
 
import sys
import Seq
from optparse import OptionParser

src/s/e/Seq-HEAD/scripts/namerepl.py   Seq(Download)
#!/usr/bin/env python
 
import sys
import Seq
from optparse import OptionParser

src/s/e/Seq-HEAD/scripts/findDuplicates.py   Seq(Download)
import time
 
import Seq
from Seq.sequtil import split_and_merge
 

src/s/e/Seq-HEAD/scripts/alnview.py   Seq(Download)
import time
 
import Seq
log = logging
 

src/s/e/Seq-HEAD/scripts/aln2fasta.py   Seq(Download)
#!/usr/bin/env python
 
import sys
import Seq
 

src/s/e/Seq-HEAD/sequtil.py   Seq(Download)
log = logging
 
import Seq
 
from Dictionaries import translationWithoutAmbiguity, translationWithAmbiguity, translationWithoutAmbiguity3, translationWithAmbiguity3, complementDict, threeToOneLetterAADict, IUPAC_rev

src/s/e/Seq-HEAD/run_fasta.py   Seq(Download)
import sys, os, re, logging, copy, random, tempfile, string, commands, logging, pprint, glob
from sequtil import cast
import Seq
 
###### copy this code into each module to set up logging

src/s/e/Seq-HEAD/io_embl.py   Seq(Download)
import re, os, sys
import logging
import Seq
from sequtil import wrap, removeAllButAlpha
 

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