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src/o/r/Orange-Bioinformatics-2.5.25/orangecontrib/bio/chem.py   Orange-Bioinformatics(Download)
        from bkchem.oasa.oasa.svg_out import svg_out as _svg_out
        from bkchem.oasa.oasa.pybel_bridge import PybelConverter
        from bkchem.oasa.oasa.coords_generator import coords_generator
        from bkchem.oasa.oasa import dom_extensions
    except ImportError:
        o_mol, idx2oa = PybelConverter.pybel_to_oasa_molecule_with_atom_map(mol)
#        from oasa.coords_generator import coords_generator
        gen = coords_generator(30)
        gen.calculate_coords(o_mol, bond_length=30, force=True)
##        self.oasa2obidx = dict([(value, key) for key, value in ix2oa.items()])
        o_mol, idx2oa = PybelConverter.pybel_to_oasa_molecule_with_atom_map(mol)
#        from oasa.coords_generator import coords_generator
        gen = coords_generator(30)
        gen.calculate_coords(o_mol, bond_length=30, force=True)
##        self.oasa2obidx = dict([(value, key) for key, value in ix2oa.items()])