Did I find the right examples for you? yes no      Crawl my project      Python Jobs

All Samples(4)  |  Call(2)  |  Derive(0)  |  Import(2)

src/s/m/smash-HEAD/smashbenchmarking/vcf_eval/eval_helper.py   smash(Download)
from __future__ import print_function
 
from chrom_variants import VARIANT_TYPE,GENOTYPE_TYPE,extract_range,ChromVariants
from rectify_seq import SequenceRescuer
 
    def _extract(self,chromvariant,locset,num_type_dict):
        clone = ChromVariants(chromvariant.chrom, chromvariant._max_indel_len)
 
        for loc in locset:
            var = chromvariant.all_variants[loc]

src/s/m/smash-HEAD/smashbenchmarking/vcf_eval/variants.py   smash(Download)
 
from eval_helper import chrom_evaluate_variants
from chrom_variants import ChromVariants
from itertools import chain
 
  def _virgin_chrom(self, chrom):
    """Return an empty set of variants on a given chromosome."""
    return ChromVariants(chrom, self._max_indel_len, **self._args)
 
  def _add_record(self, record):