Did I find the right examples for you? yes no

All Samples(5)  |  Call(5)  |  Derive(0)  |  Import(0)

src/q/i/qiime-1.8.0/qiime/align_seqs.py   qiime(Download)
        for seq_id, seq in MinimalFastaParser(open(template_alignment_fp)):
            # replace '.' characters with '-' characters
            template_alignment.append((seq_id,seq.replace('.','-').upper()))        
        try:
            template_alignment = LoadSeqs(data=template_alignment,moltype=DNA,\

src/p/y/pycogent-HEAD/tests/test_evolve/test_newq.py   pycogent(Download)
            p1 = [seq[i] for i in range(0,aln_len,2)]
            p2 = [seq[i] for i in range(1,aln_len,2)]
            posn1.append([name, ''.join(p1)])
            posn2.append([name, ''.join(p2)])
 

src/c/o/cogent-1.5.3/tests/test_evolve/test_newq.py   cogent(Download)
            p1 = [seq[i] for i in range(0,aln_len,2)]
            p2 = [seq[i] for i in range(1,aln_len,2)]
            posn1.append([name, ''.join(p1)])
            posn2.append([name, ''.join(p2)])