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src/p/y/pycogent-HEAD/tests/test_core/test_core_standalone.py   pycogent(Download)
        seq_coll = LoadSeqs(data = {'seq1': 'ACGTAA', 'seq2': 'ACG',
                            'seq3': 'ACGCGT'}, moltype = DNA, aligned=False)
        assert seq_coll.hasTerminalStops() == True
        seq_coll = LoadSeqs(data = {'seq1': 'ACGTAC', 'seq2': 'ACGACG',
                            'seq3': 'ACGCGT'}, moltype = DNA, aligned=False)
        assert seq_coll.hasTerminalStops() == False
        # alignments
        aln = LoadSeqs(data = {'seq1': 'ACGTAA', 'seq2': 'ACGCAA',
                            'seq3': 'ACGCGT'}, moltype = DNA)
        assert aln.hasTerminalStops() == True
        aln = LoadSeqs(data = {'seq1': 'ACGTAA', 'seq2': 'ACGTAG',
                            'seq3': 'ACGTGA'}, moltype = DNA)
        assert aln.hasTerminalStops() == True
        aln = LoadSeqs(data = {'seq1': 'ACGCAA', 'seq2': 'ACGCAA',
                            'seq3': 'ACGCGT'}, moltype = DNA)
        assert aln.hasTerminalStops() == False

src/c/o/cogent-1.5.3/tests/test_core/test_core_standalone.py   cogent(Download)
        seq_coll = LoadSeqs(data = {'seq1': 'ACGTAA', 'seq2': 'ACG',
                            'seq3': 'ACGCGT'}, moltype = DNA, aligned=False)
        assert seq_coll.hasTerminalStops() == True
        seq_coll = LoadSeqs(data = {'seq1': 'ACGTAC', 'seq2': 'ACGACG',
                            'seq3': 'ACGCGT'}, moltype = DNA, aligned=False)
        assert seq_coll.hasTerminalStops() == False
        # alignments
        aln = LoadSeqs(data = {'seq1': 'ACGTAA', 'seq2': 'ACGCAA',
                            'seq3': 'ACGCGT'}, moltype = DNA)
        assert aln.hasTerminalStops() == True
        aln = LoadSeqs(data = {'seq1': 'ACGTAA', 'seq2': 'ACGTAG',
                            'seq3': 'ACGTGA'}, moltype = DNA)
        assert aln.hasTerminalStops() == True
        aln = LoadSeqs(data = {'seq1': 'ACGCAA', 'seq2': 'ACGCAA',
                            'seq3': 'ACGCGT'}, moltype = DNA)
        assert aln.hasTerminalStops() == False