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All Samples(6)  |  Call(4)  |  Derive(0)  |  Import(2)

src/c/o/cogent-1.5.3/cogent/draw/dotplot.py   cogent(Download)
from cogent.draw.linear import Display
from cogent.draw.rlg2mpl import Drawable, figureLayout
from cogent.align.align import dotplot
 
__author__ = "Peter Maxwell and Gavin Huttley"
        key = (min_gap, window, threshold)
        if not self._cache.has_key(key):
            fwd = dotplot(str(self.seq1), str(self.seq2),
                    window, threshold, min_gap, None)
            if hasattr(self.seq1, "reversecomplement"):
                rev = dotplot(str(self.seq1.reversecomplement()), 

src/p/y/pycogent-HEAD/cogent/draw/dotplot.py   pycogent(Download)
from cogent.draw.linear import Display
from cogent.draw.rlg2mpl import Drawable, figureLayout
from cogent.align.align import dotplot
 
__author__ = "Peter Maxwell and Gavin Huttley"
        key = (min_gap, window, threshold)
        if not self._cache.has_key(key):
            fwd = dotplot(str(self.seq1), str(self.seq2),
                    window, threshold, min_gap, None)
            if hasattr(self.seq1, "reversecomplement"):
                rev = dotplot(str(self.seq1.reversecomplement()),