Did I find the right examples for you? yes no

All Samples(6)  |  Call(3)  |  Derive(0)  |  Import(3)

src/q/i/qiime-1.8.0/qiime/pick_otus.py   qiime(Download)
from cogent.app.mothur import Mothur
from cogent.app.formatdb import build_blast_db_from_fasta_path
from cogent.app.blast import blast_seqs, Blastall, BlastResult
from cogent.core.sequence import DnaSequence
from cogent.util.misc import remove_files
    if blast_result['StdOut']:
        lines = [x for x in blast_result['StdOut']]
        blast_result = BlastResult(lines)
    else:
        return {}.fromkeys(seq_ids,[])

src/q/i/qiime-1.8.0/qiime/assign_taxonomy.py   qiime(Download)
from cogent import LoadSeqs, DNA
from cogent.app.formatdb import build_blast_db_from_fasta_path
from cogent.app.blast import blast_seqs, Blastall, BlastResult
from cogent.app import rtax
from cogent.app.util import ApplicationNotFoundError
        if blast_result['StdOut']:
            lines = [x for x in blast_result['StdOut']]
            blast_result = BlastResult(lines)
        else:
            return {}.fromkeys(seq_ids,[])

src/q/i/qiime-1.8.0/qiime/exclude_seqs_by_blast.py   qiime(Download)
from cogent.util.misc import remove_files
from cogent.parse.fasta import MinimalFastaParser
from cogent.app.blast import blast_seqs, Blastall, BlastResult
 
 
 
 
    curr_blast_result=BlastResult(raw_output_data)
 
    align_filter = make_percent_align_filter(percent_aligned)