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src/c/o/cogent-1.5.3/tests/test_app/test_blast.py   cogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.parse.blast import QMEBlast9
from cogent.app.blast import seqs_to_stream,\
    make_subject_match_scorer, make_shotgun_scorer, keep_everything_scorer, \
    ids_from_seq_lower_threshold, PsiBlast, psiblast_n_neighbors
                '-d':'test_bdb'}
        query = self.query_1.split('\n')
        app = PsiBlast(params=params, 
                InputHandler='_input_as_lines')
        #the command below should result in finding itself and 2554

src/p/y/pycogent-HEAD/tests/test_app/test_blast.py   pycogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.parse.blast import QMEBlast9
from cogent.app.blast import seqs_to_stream,\
    make_subject_match_scorer, make_shotgun_scorer, keep_everything_scorer, \
    ids_from_seq_lower_threshold, PsiBlast, psiblast_n_neighbors
                '-d':'test_bdb'}
        query = self.query_1.split('\n')
        app = PsiBlast(params=params, 
                InputHandler='_input_as_lines')
        #the command below should result in finding itself and 2554