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All Samples(6)  |  Call(3)  |  Derive(0)  |  Import(3)

src/q/i/qiime-1.8.0/qiime/exclude_seqs_by_blast.py   qiime(Download)
from cogent.util.misc import remove_files
from cogent.parse.fasta import MinimalFastaParser
from cogent.app.blast import blast_seqs, Blastall, BlastResult
 
 
    params.update(extra_params)
 
    output=blast_seqs(seqs,\
                Blastall,\
                blast_db=blast_db,\

src/q/i/qiime-1.8.0/qiime/pick_otus.py   qiime(Download)
from cogent.app.mothur import Mothur
from cogent.app.formatdb import build_blast_db_from_fasta_path
from cogent.app.blast import blast_seqs, Blastall, BlastResult
from cogent.core.sequence import DnaSequence
from cogent.util.misc import remove_files
 
    blast_result = blast_seqs(\
     seqs,Blastall,blast_db=blast_db,\
     params={'-p':blast_program,'-n':'F'},\
     add_seq_names=False)

src/q/i/qiime-1.8.0/qiime/assign_taxonomy.py   qiime(Download)
from cogent import LoadSeqs, DNA
from cogent.app.formatdb import build_blast_db_from_fasta_path
from cogent.app.blast import blast_seqs, Blastall, BlastResult
from cogent.app import rtax
from cogent.app.util import ApplicationNotFoundError
 
        blast_result = blast_seqs(\
         seqs,Blastall,blast_db=blast_db,\
         params={'-p':'blastn','-n':'T'},\
         add_seq_names=False)