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src/c/o/cogent-1.5.3/tests/test_app/test_clustalw.py   cogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.util.misc import flatten
from cogent.app.clustalw import Clustalw, alignUnalignedSeqsFromFile,\
    alignUnalignedSeqs, alignTwoAlignments, addSeqsToAlignment,\
    buildTreeFromAlignment, build_tree_from_alignment, \
    def test_alignTwoAlignments(self):
        """Clustalw alignTwoAlignments should work as expected"""
        res = alignTwoAlignments('/tmp/ct/align1','/tmp/ct/align2',\
            'twoalign.aln')
        self.assertEqual(cw_vers.sub("", res['Align'].read()),

src/p/y/pycogent-HEAD/tests/test_app/test_clustalw.py   pycogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.util.misc import flatten
from cogent.app.clustalw import Clustalw, alignUnalignedSeqsFromFile,\
    alignUnalignedSeqs, alignTwoAlignments, addSeqsToAlignment,\
    buildTreeFromAlignment, build_tree_from_alignment, \
    def test_alignTwoAlignments(self):
        """Clustalw alignTwoAlignments should work as expected"""
        res = alignTwoAlignments('/tmp/ct/align1','/tmp/ct/align2',\
            'twoalign.aln')
        self.assertEqual(cw_vers.sub("", res['Align'].read()),