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src/c/o/cogent-1.5.3/tests/test_app/test_clustalw.py   cogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.util.misc import flatten
from cogent.app.clustalw import Clustalw, alignUnalignedSeqsFromFile,\
    alignUnalignedSeqs, alignTwoAlignments, addSeqsToAlignment,\
    buildTreeFromAlignment, build_tree_from_alignment, \
    def test_align_and_build_tree(self):
        """Aligns and builds a tree for a set of sequences"""
        res = align_and_build_tree(self.seqs1, RNA)
        self.assertEqual(res['Align'].toFasta(), self.aln1_fasta)
 

src/p/y/pycogent-HEAD/tests/test_app/test_clustalw.py   pycogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.util.misc import flatten
from cogent.app.clustalw import Clustalw, alignUnalignedSeqsFromFile,\
    alignUnalignedSeqs, alignTwoAlignments, addSeqsToAlignment,\
    buildTreeFromAlignment, build_tree_from_alignment, \
    def test_align_and_build_tree(self):
        """Aligns and builds a tree for a set of sequences"""
        res = align_and_build_tree(self.seqs1, RNA)
        self.assertEqual(res['Align'].toFasta(), self.aln1_fasta)