Did I find the right examples for you? yes no

All Samples(4)  |  Call(2)  |  Derive(0)  |  Import(2)

src/c/o/cogent-1.5.3/tests/test_app/test_clustalw.py   cogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.util.misc import flatten
from cogent.app.clustalw import Clustalw, alignUnalignedSeqsFromFile,\
    alignUnalignedSeqs, alignTwoAlignments, addSeqsToAlignment,\
    buildTreeFromAlignment, build_tree_from_alignment, \
    def test_buildTreeFromAlignment(self):
        """Clustalw buildTreeFromAlignment shoudl work as expected"""
        pre_res = addSeqsToAlignment('/tmp/ct/align1','/tmp/ct/seq2.txt',\
            'alignseqs',WorkingDir='/tmp/ct')
        res = buildTreeFromAlignment('/tmp/ct/alignseqs',WorkingDir='/tmp/ct')

src/p/y/pycogent-HEAD/tests/test_app/test_clustalw.py   pycogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.util.misc import flatten
from cogent.app.clustalw import Clustalw, alignUnalignedSeqsFromFile,\
    alignUnalignedSeqs, alignTwoAlignments, addSeqsToAlignment,\
    buildTreeFromAlignment, build_tree_from_alignment, \
    def test_buildTreeFromAlignment(self):
        """Clustalw buildTreeFromAlignment shoudl work as expected"""
        pre_res = addSeqsToAlignment('/tmp/ct/align1','/tmp/ct/seq2.txt',\
            'alignseqs',WorkingDir='/tmp/ct')
        res = buildTreeFromAlignment('/tmp/ct/alignseqs',WorkingDir='/tmp/ct')