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src/q/i/qiime-1.8.0/qiime/make_phylogeny.py   qiime(Download)
import cogent.app.mafft
import cogent.app.raxml_v730
import cogent.app.fasttree
import cogent.app.fasttree_v1
import cogent.app.clearcut

src/q/i/qiime-1.8.0/tests/test_make_phylogeny.py   qiime(Download)
from cogent.util.unit_test import TestCase, main
from qiime.util import get_tmp_filename
import cogent.app.fasttree
from qiime.make_phylogeny import TreeBuilder, CogentTreeBuilder