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src/c/o/cogent-1.5.3/tests/test_app/test_muscle_v38.py   cogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.util.misc import flatten
from cogent.app.muscle_v38 import Muscle, muscle_seqs, aln_tree_seqs, \
        align_unaligned_seqs, build_tree_from_alignment, \
        align_and_build_tree, add_seqs_to_alignment, align_two_alignments
    def test_align_and_build_tree(self):
        """Should align and build a tree from a set of sequences"""
        res = align_and_build_tree(self.seqs1, RNA)
        self.assertEqual(res['Align'].toFasta(), align1)
 

src/p/y/pycogent-HEAD/tests/test_app/test_muscle_v38.py   pycogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.util.misc import flatten
from cogent.app.muscle_v38 import Muscle, muscle_seqs, aln_tree_seqs, \
        align_unaligned_seqs, build_tree_from_alignment, \
        align_and_build_tree, add_seqs_to_alignment, align_two_alignments
    def test_align_and_build_tree(self):
        """Should align and build a tree from a set of sequences"""
        res = align_and_build_tree(self.seqs1, RNA)
        self.assertEqual(res['Align'].toFasta(), align1)