Did I find the right examples for you? yes no

All Samples(4)  |  Call(4)  |  Derive(0)  |  Import(0)

src/p/y/pycogent-HEAD/tests/test_core/test_alignment.py   pycogent(Download)
        s3 = DNA.Sequence('AGAT', Name='s3')
        da = DenseAlignment([s1,s2,s3], MolType=DNA, Alphabet=DNA.Alphabet)
        obs = da.getSeqFreqs()
        self.assertEqual(obs.Data, exp)
        self.assertEqual(obs.Alphabet, DNA.Alphabet)
        s3 = 'AGAT'
        da = DenseAlignment([s1,s2,s3], MolType=DNA, Alphabet=DNA.Alphabet)
        obs = da.getSeqFreqs()
        self.assertEqual(obs.Data, exp)
        self.assertEqual(obs.Alphabet, DNA.Alphabet)

src/c/o/cogent-1.5.3/tests/test_core/test_alignment.py   cogent(Download)
        s3 = DNA.Sequence('AGAT', Name='s3')
        da = DenseAlignment([s1,s2,s3], MolType=DNA, Alphabet=DNA.Alphabet)
        obs = da.getSeqFreqs()
        self.assertEqual(obs.Data, exp)
        self.assertEqual(obs.Alphabet, DNA.Alphabet)
        s3 = 'AGAT'
        da = DenseAlignment([s1,s2,s3], MolType=DNA, Alphabet=DNA.Alphabet)
        obs = da.getSeqFreqs()
        self.assertEqual(obs.Data, exp)
        self.assertEqual(obs.Alphabet, DNA.Alphabet)