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src/q/i/qiime-1.8.0/scripts/insert_seqs_into_tree.py   qiime(Download)
 
        # combine and load the reference plus query
        combined_aln = MinimalFastaParser(StringIO(load_ref_aln.toFasta() + \
                                                   '\n' + aln.toFasta()))
        # overwrite the alignment map