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src/c/o/cogent-1.5.3/cogent/core/moltype.py   cogent(Download)
__status__ = "Production"
 
from cogent.core.alphabet import CharAlphabet, Enumeration, Alphabet, \
    AlphabetError, _make_complement_array
from cogent.util.misc import FunctionWrapper, add_lowercase, iterable, if_
            if badchar:
                motif = badchar.group()
                raise AlphabetError(motif)
        except TypeError:   #not alphabetic sequence: try slow method
            for motif in seq:
                if motif not in alpha:
                    raise AlphabetError(motif)

src/p/y/pycogent-HEAD/cogent/core/moltype.py   pycogent(Download)
__status__ = "Production"
 
from cogent.core.alphabet import CharAlphabet, Enumeration, Alphabet, \
    AlphabetError, _make_complement_array
from cogent.util.misc import FunctionWrapper, add_lowercase, iterable, if_
            if badchar:
                motif = badchar.group()
                raise AlphabetError(motif)
        except TypeError:   #not alphabetic sequence: try slow method
            for motif in seq:
                if motif not in alpha:
                    raise AlphabetError(motif)

src/c/o/cogent-1.5.3/cogent/parse/rdb.py   cogent(Download)
from cogent.core.sequence import Sequence, RnaSequence
from cogent.core.info import Info
from cogent.core.alphabet import AlphabetError
 
__author__ = "Sandra Smit"

src/p/y/pycogent-HEAD/cogent/parse/rdb.py   pycogent(Download)
from cogent.core.sequence import Sequence, RnaSequence
from cogent.core.info import Info
from cogent.core.alphabet import AlphabetError
 
__author__ = "Sandra Smit"