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src/c/o/cogent-1.5.3/cogent/seqsim/usage.py   cogent(Download)
 
from cogent.core.alphabet import get_array_type
from cogent.core.usage import RnaBases, DnaBases, DnaPairs, RnaPairs, Codons
from cogent.core.sequence import ModelSequence, ModelDnaSequence, \
    ModelRnaSequence

src/p/y/pycogent-HEAD/cogent/seqsim/usage.py   pycogent(Download)
 
from cogent.core.alphabet import get_array_type
from cogent.core.usage import RnaBases, DnaBases, DnaPairs, RnaPairs, Codons
from cogent.core.sequence import ModelSequence, ModelDnaSequence, \
    ModelRnaSequence

src/c/o/cogent-1.5.3/cogent/seqsim/analysis.py   cogent(Download)
#!/usr/bin/env python
from tree import RangeNode, balanced_breakpoints
from cogent.core.usage import DnaPairs
from usage import Counts
from random import choice

src/p/y/pycogent-HEAD/cogent/seqsim/analysis.py   pycogent(Download)
#!/usr/bin/env python
from tree import RangeNode, balanced_breakpoints
from cogent.core.usage import DnaPairs
from usage import Counts
from random import choice

src/p/y/pycogent-HEAD/tests/test_seqsim/test_usage.py   pycogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.core.moltype import RNA
from cogent.core.usage import RnaBases, DnaBases, RnaPairs, DnaPairs
from cogent.core.alphabet import Alphabet
from cogent.core.sequence import ModelRnaSequence as RnaSequence, \

src/p/y/pycogent-HEAD/tests/test_seqsim/test_tree.py   pycogent(Download)
from cogent.seqsim.tree import RangeNode, balanced_breakpoints, BalancedTree, \
    RandomTree, CombTree, StarTree, LineTree
from cogent.core.usage import DnaPairs
from copy import deepcopy
from operator import mul, or_, add

src/p/y/pycogent-HEAD/tests/test_seqsim/test_analysis.py   pycogent(Download)
    rates_to_array, multivariate_normal_prob
from cogent.seqsim.tree import RangeNode
from cogent.core.usage import DnaPairs, ABPairs
from cogent.seqsim.usage import Rates, Counts, Probs
from numpy import array, average, ones, zeros, float64, ravel, diag, any

src/c/o/cogent-1.5.3/tests/test_seqsim/test_usage.py   cogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.core.moltype import RNA
from cogent.core.usage import RnaBases, DnaBases, RnaPairs, DnaPairs
from cogent.core.alphabet import Alphabet
from cogent.core.sequence import ModelRnaSequence as RnaSequence, \

src/c/o/cogent-1.5.3/tests/test_seqsim/test_tree.py   cogent(Download)
from cogent.seqsim.tree import RangeNode, balanced_breakpoints, BalancedTree, \
    RandomTree, CombTree, StarTree, LineTree
from cogent.core.usage import DnaPairs
from copy import deepcopy
from operator import mul, or_, add

src/c/o/cogent-1.5.3/tests/test_seqsim/test_analysis.py   cogent(Download)
    rates_to_array, multivariate_normal_prob
from cogent.seqsim.tree import RangeNode
from cogent.core.usage import DnaPairs, ABPairs
from cogent.seqsim.usage import Rates, Counts, Probs
from numpy import array, average, ones, zeros, float64, ravel, diag, any