Did I find the right examples for you? yes no

All Samples(4)  |  Call(0)  |  Derive(0)  |  Import(4)

src/c/o/cogent-1.5.3/cogent/core/entity.py   cogent(Download)
                                   AA_ATOM_REMOTE_ORDER, AREAIMOL_VDW_RADII, \
                                   DEFAULT_AREAIMOL_VDW_RADIUS, AA_NAMES_3to1
from cogent.data.ligand_properties import HOH_NAMES, LIGAND_AREAIMOL_VDW_RADII
from operator import itemgetter, gt, ge, lt, le, eq, ne, or_, and_, contains, \
                                                                 is_, is_not
ALPHABET = 'ABCDEFGHIJKLMNOPQRSTUVWXYZ_ '
HIERARCHY = ['H', 'S', 'M', 'C', 'R', 'A']
AREAIMOL_VDW_RADII.update(LIGAND_AREAIMOL_VDW_RADII)
 
# error while creating a structure (non-recoverable error)

src/p/y/pycogent-HEAD/cogent/core/entity.py   pycogent(Download)
                                   AA_ATOM_REMOTE_ORDER, AREAIMOL_VDW_RADII, \
                                   DEFAULT_AREAIMOL_VDW_RADIUS, AA_NAMES_3to1
from cogent.data.ligand_properties import HOH_NAMES, LIGAND_AREAIMOL_VDW_RADII
from operator import itemgetter, gt, ge, lt, le, eq, ne, or_, and_, contains, \
                                                                 is_, is_not
ALPHABET = 'ABCDEFGHIJKLMNOPQRSTUVWXYZ_ '
HIERARCHY = ['H', 'S', 'M', 'C', 'R', 'A']
AREAIMOL_VDW_RADII.update(LIGAND_AREAIMOL_VDW_RADII)
 
# error while creating a structure (non-recoverable error)

src/c/o/cogent-1.5.3/cogent/format/xyzrn.py   cogent(Download)
from cogent.struct.selection import einput
from cogent.data.protein_properties import AREAIMOL_VDW_RADII
from cogent.data.ligand_properties import LIGAND_AREAIMOL_VDW_RADII
 
XYZRN_COORDS_STRING = "%8.3f %8.3f %8.3f %8.3f %d %s\n"
AREAIMOL_VDW_RADII.update(LIGAND_AREAIMOL_VDW_RADII)

src/p/y/pycogent-HEAD/cogent/format/xyzrn.py   pycogent(Download)
from cogent.struct.selection import einput
from cogent.data.protein_properties import AREAIMOL_VDW_RADII
from cogent.data.ligand_properties import LIGAND_AREAIMOL_VDW_RADII
 
XYZRN_COORDS_STRING = "%8.3f %8.3f %8.3f %8.3f %d %s\n"
AREAIMOL_VDW_RADII.update(LIGAND_AREAIMOL_VDW_RADII)