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src/p/y/pycogent-HEAD/tests/test_evolve/test_pairwise_distance.py   pycogent(Download)
    def test_distance_pair(self):
        """get distances dict"""
        calc = TN93Pair(DNA, alignment=self.alignment)
        calc.run(show_progress=False)
        dists = calc.getPairwiseDistances()

src/c/o/cogent-1.5.3/tests/test_evolve/test_pairwise_distance.py   cogent(Download)
    def est_distance_pair(self):
        """get distances dict"""
        calc = TN93Pair(DNA, alignment=self.alignment)
        calc.run()
        dists = calc.getPairwiseDistances()