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src/c/o/cogent-1.5.3/cogent/evolve/substitution_model.py   cogent(Download)
 
from cogent.core import moltype
from cogent.evolve import parameter_controller, predicate, motif_prob_model
from cogent.evolve.substitution_calculation import (
    SubstitutionParameterDefn as ParamDefn, 

src/p/y/pycogent-HEAD/cogent/evolve/substitution_model.py   pycogent(Download)
 
from cogent.core import moltype
from cogent.evolve import parameter_controller, predicate, motif_prob_model
from cogent.evolve.substitution_calculation import (
    SubstitutionParameterDefn as ParamDefn, 

src/p/y/pycogent-HEAD/tests/test_evolve/test_likelihood_function.py   pycogent(Download)
from numpy import ones, dot
 
from cogent.evolve import substitution_model, predicate
from cogent import DNA, LoadSeqs, LoadTree
from cogent.util.unit_test import TestCase, main

src/c/o/cogent-1.5.3/tests/test_evolve/test_likelihood_function.py   cogent(Download)
from numpy import ones, dot
 
from cogent.evolve import substitution_model, predicate
from cogent import DNA, LoadSeqs, LoadTree
from cogent.util.unit_test import TestCase, main