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src/c/o/cogent-1.5.3/cogent/evolve/models.py   cogent(Download)
from cogent.evolve import substitution_model
from cogent.evolve.predicate import MotifChange, replacement
from cogent.evolve.solved_models import F81, HKY85, TN93
 
__author__ = "Matthew Wakefield"
def JC69(**kw):
    """Jukes and Cantor's 1969 model"""
    return F81(equal_motif_probs=True, optimise_motif_probs=False, **kw)
 
def GTR(**kw):

src/p/y/pycogent-HEAD/cogent/evolve/models.py   pycogent(Download)
from cogent.evolve import substitution_model
from cogent.evolve.predicate import MotifChange, replacement
from cogent.evolve.solved_models import F81, HKY85, TN93
 
__author__ = "Matthew Wakefield"
def JC69(**kw):
    """Jukes and Cantor's 1969 model"""
    return F81(equal_motif_probs=True, optimise_motif_probs=False, **kw)
 
def GTR(**kw):