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src/c/o/cogent-1.5.3/cogent/evolve/coevolution.py   cogent(Download)
    mprobs_matrix = ones((num,num), float)*word_probs
 
    return epm.calcQ(word_probs, mprobs_matrix)
 
def create_gctmpca_input(aln,tree):

src/p/y/pycogent-HEAD/cogent/evolve/coevolution.py   pycogent(Download)
    mprobs_matrix = ones((num,num), float)*word_probs
 
    return epm.calcQ(word_probs, mprobs_matrix)
 
def create_gctmpca_input(aln,tree):