All Samples(4) | Call(2) | Derive(0) | Import(2)
src/c/o/cogent-1.5.3/tests/test_evolve/test_newq.py cogent(Download)
from cogent import LoadSeqs, DNA, LoadTree, LoadTable from cogent.evolve.substitution_model import Nucleotide, General, \ GeneralStationary from cogent.evolve.discrete_markov import DiscreteSubstitutionModel
def fit_gen_stat(results=results): if 'gen_stat' in results: return gen_stat = GeneralStationary(DNA.Alphabet) gen_stat_lf = _make_likelihood(gen_stat, tree, results)
src/p/y/pycogent-HEAD/tests/test_evolve/test_newq.py pycogent(Download)
from cogent import LoadSeqs, DNA, LoadTree, LoadTable from cogent.evolve.substitution_model import Nucleotide, General, \ GeneralStationary from cogent.evolve.discrete_markov import DiscreteSubstitutionModel
def fit_gen_stat(results=results): if 'gen_stat' in results: return gen_stat = GeneralStationary(DNA.Alphabet) gen_stat_lf = _make_likelihood(gen_stat, tree, results)