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src/c/o/cogent-1.5.3/cogent/app/rnaalifold.py   cogent(Download)
from cogent.parse.fasta import MinimalFastaParser
from cogent.parse.rnaalifold import rnaalifold_parser, MinimalRnaalifoldParser
from cogent.format.clustal import clustal_from_alignment
from cogent.struct.rna2d import ViennaStructure
 
    app = RNAalifold(WorkingDir='/tmp',\
        InputHandler='_input_as_multiline_string',params=params)
    res = app(clustal_from_alignment(int_map))
 
    #seq,pairs,energy = rnaalifold_parser(res['StdOut'].readlines())

src/p/y/pycogent-HEAD/cogent/app/rnaalifold.py   pycogent(Download)
from cogent.parse.fasta import MinimalFastaParser
from cogent.parse.rnaalifold import rnaalifold_parser, MinimalRnaalifoldParser
from cogent.format.clustal import clustal_from_alignment
from cogent.struct.rna2d import ViennaStructure
 
    app = RNAalifold(WorkingDir='/tmp',\
        InputHandler='_input_as_multiline_string',params=params)
    res = app(clustal_from_alignment(int_map))
 
    #seq,pairs,energy = rnaalifold_parser(res['StdOut'].readlines())

src/p/y/pycogent-HEAD/tests/test_format/test_clustal.py   pycogent(Download)
 #!/usr/bin/env python
"""Tests for Clustal sequence format writer.
"""
from cogent.util.unit_test import TestCase, main
from cogent.format.clustal import clustal_from_alignment

src/c/o/cogent-1.5.3/tests/test_format/test_clustal.py   cogent(Download)
 #!/usr/bin/env python
"""Tests for Clustal sequence format writer.
"""
from cogent.util.unit_test import TestCase, main
from cogent.format.clustal import clustal_from_alignment