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src/q/i/qiime-HEAD/tests/test_beta_diversity.py   qiime(Download)
from qiime.util import load_qiime_config
from cogent.core.tree import PhyloNode
from cogent.maths.distance_transform import dist_chisq
from qiime.parse import parse_newick, parse_distmat, parse_matrix
from qiime.beta_diversity import BetaDiversityCalc, single_file_beta,\
        matrix, labels = beta_calc_chisq(data_path=self.l19_fp, tree_path=None)
        self.assertEqual(labels, self.l19_sample_names)
        assert_almost_equal(matrix, dist_chisq(self.l19_data))
 
    def test_l19_unifrac(self):

src/q/i/qiime-1.8.0/tests/test_beta_diversity.py   qiime(Download)
from qiime.util import get_tmp_filename, load_qiime_config
from cogent.core.tree import PhyloNode
from cogent.maths.distance_transform import dist_chisq
from qiime.parse import parse_newick, parse_distmat, parse_matrix
from qiime.beta_diversity import BetaDiversityCalc, single_file_beta,\